USAFA’s application process is lengthy and cumbersome. USAFA has a process to determine how they will weigh your GPA based on their understanding - provided by the schools counselors providing an overview of the school and types of classes the students have available to them. That is why USAFA will put in the students profile their calculated GPA; which may, or may not, be the same as what was reported.
I believe they do this in an effort to understand circumstances mentioned above - “all on level classes are classified as honors”.
again, I believe, they are trying to streamline, as best they can, the weight of the program and the rigor of the classes each candidate had available to them - as they know not all schools are created equal...
That said -
I think you have to pick the best school for you... and what your ultimate goal is... I agree that academics is only one part of the application review process however important. It is my understanding that USAFA won’t take other college credits anyway - you may be able to test out of taking a class, but you cannot bring a college class with you... at least how I understand it.
USAFA will do its evaluation of the whole person and determine if the rigor shown was actually rigor based on the available options to the student...
Please correct me where I may have misrepresented as this is how I understand it.