I was told that I could get some information on how big of an issue my eyes are when applying to USAFA. Here is my eye script:
Would this disqualify me from USAFA?
Is there anything I can do? (Surgery/Medical Waiver)
Standard advice, if you haven't yet read every page, dropdown and link at USAFA.edu, you should do so. Most answers are there. Here in SAF, scan the DODMERB forum for related threads. The Nominations forum and the Stickies at the top are also useful at the start of this long process, as is the Acronyms thread in the Community forum.
Very broadly, you apply and fill out medical portions. Be careful of "have you ever been diagnosed with" - that means by medical authority. Some conditions or occurrences may not meet the standard, and DODMERB will DQ you. Depending on each Service and Service Academy's internal policies (missions differ, so waivers differ), a waiver process may be initiated. Not by you.
As to surgery, be very, very careful and do your research on what is allowed. See the link above. It answers your question on that.
Settle in and read the primary sources. That is your best resource.