I don't think it does until ROTC requests it. I don't know the official answer, but can tell you what has happened with my son.
He has been medically qualified for USAFA and USNA since the summer. He was awarded a scholarship from AFROTC last week and just today his status changed on the DODMERB website for AFROTC. It says pending or something like that, but Dec 23 is the date of the request.
He has also applied for a Navy ROTC scholarship, but no decision has been made on his application and there is not an "entry" for Navy ROTC on the Dodmerb site.