according to the chart posted on a similar thread it is pretty clear they were in addition to the allocation along with 24 nurses and 19 green to gold.
edit, also I believe the recommendation is made prior to the OML being complied.
edit, here is the link to the chart I mentioned
http://imgur.com/7aUv91X
According to the chart, the Active Duty Allocation was 2870 and the Nurse Allocation was 146, making the total Active Duty Allocation 3016.
Under Component Totals they listed 2878 Active Duty selected above the line, and 128 including the 86 SMC cadets that were below the line to total the 3016 Allocation listed.
Looking at these numbers it's pretty clear that those below the AD Line were not simply added to a set total but were part of that total. The argument can be made that had those below the line not received AD, there would have been an additional 86 cadets that were above the line that would have made AD.
It's hard to make a clear determination by just looking at the numbers they gave, it could be taken either way.
It is an entirely different discussion as to whether those at SMCs deserve this process of selection based on they type of school environment they must go through. an argument can be made that they have the added stress of a SMC that could factor in. You would really need to know the specifics of why these cadets were below the line, is it grades due to their major and added obligations of a SMC. Is it something else, APFT Scores, Ranking (which can have a large effect when the class size is so large as it is at some SMCs.
Cadets at traditional colleges do not have to deal with the 24 hour military lifestyle, they are not Nobs or Rats for the first year, this could all be part of the equation.
As the old saying goes, what do you call the person that graduates last in their class at West Point......."An Active Duty 2LT"
One thing for sure, any advantage a SMC or SA cadet has ends once they commission, from then on it's all one big pot.