I don't think this is truly an official USAFA site, but...
https://www.academyadmissions.com/requirements/physical/
It shows the following for average scores (note it does not say average score for those receiving an appointment)
Women AVG:
Basketball Throw - 42' your daughter 36'
Pull-Ups - 2 your daughter - 4
Flexed Arm Hang - 31 seconds (I have always been told 1 pull-up is worth more than any time on the flexed arm hang)
Shuttle Run - 9.4 Seconds your daughter - 10.6
Modified Situps/crunches - 78 your daughter - 48
Push-ups - 41 your daughter 36
One Mile run - 7:30 your daughter 9:10
She's below average per the site I referenced in everything but Pull-ups.
I have seen many comments that the basketball throw is simply an event because it's always been an event and carries little to no weight (assuming decent scores in the other events).
Now that it's crunch time (no pun intended) - work on sit-ups and the mile run. Show up with a women's basketball to throw.
My daughter was a level 8 gymnast and maxed the men's scores for everything but the b-ball throw and the mile. Her CFA administrator didn't know to tell her to stop when she reached the max scores) I doubt she threw the basketball 25' (never having thrown anything but a tennis ball for the dog in her life) and received an LOA to USAFA and USNA. You can't have a pacer for the mile but the track doesn't have to be empty either.
Remember, this is one part of the admissions package. There are some large people that struggle with the selected events but might be capable of throwing a discus or shot put a country mile or being a top flight cyclist, or bring something else special to the dance. Call your admissions counselor and see if indeed your daughter passed or failed. Even if they passed but can improve - improve.
Regardless - your daughter has made significant improvement in how USAFA measures physical fitness. If she gets another shot at the CFA - follow a prescribed workout focused on those events. There is a former USN SEAL and USNA grad who has an excellent program. Now that she has established a relatively solid base, she could be in a position to make dramatic gains with proper focus.
The shuttle run is a lot of technique. The basketball throw has a lot of technique involved. The mile run for non runners is purely based on guts.